PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g26190.3
Common NameLR48_Vigan02g008700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 184aa    MW: 20805.7 Da    PI: 9.7093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g26190.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.3e-174292255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr+++ +g+++AeIrd +    +  r++lg+f+ ae Aa a+++a+  ++g
  Vang06g26190.3 42 SFRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDNAEAAALAYDQAAFVMRG 92
                    59*******.**********422...25**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-3442106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2842100IPR001471AP2/ERF domain
PROSITE profilePS5103221.90442100IPR001471AP2/ERF domain
CDDcd000182.62E-174399No hitNo description
PRINTSPR003671.8E-94354IPR001471AP2/ERF domain
PfamPF008479.1E-124392IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2143101IPR016177DNA-binding domain
PRINTSPR003671.8E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MLLYGMITSY QEQNNSCKLI IKEKEVNSQQ HKSSSGNSNG KSFRGVRRRP WGKFAAEIRD  60
STRHGIRVWL GTFDNAEAAA LAYDQAAFVM RGSAAVLNFS VEKVKESLRD MDCSFSQLEG  120
CSPVVALKRR HSLRRKMTTK KKKEETQESD SVRLENVVVL EDLGKEYLEQ LLMMSSSDAR  180
CTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2738101164ATERF1
3gcc_A4e-2738101164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127142KRRHSLRRKMTTKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513234.11e-106PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-67ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9TU531e-135A0A0L9TU53_PHAAN; Uncharacterized protein
STRINGGLYMA02G00870.11e-73(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-51ethylene response factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]